PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032876.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 440aa    MW: 47770.3 Da    PI: 7.9288
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032876.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-31107211199
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                   f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +
  EcC032876.10 107 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEfGKDR 203
                   89***************************966778999*************************************************6659999999 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l++ ++r+
  EcC032876.10 204 LFIDWRRR 211
                   99999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-4298218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29104212IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-26105194No hitNo description
PfamPF023623.5E-29107211IPR003340B3 DNA binding domain
PROSITE profilePS5086314.607107212IPR003340B3 DNA binding domain
SMARTSM010191.1E-22107212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDFREAFVEF EEAQVVKGKQ NPFSYSSSSS SPSSSTSHHQ HTRGLFPVGN VSNGQWDTPM  60
GSWLAHGFDR EADGRSKPEL MDVSPPRDDE HSRPAAPAPP IEREHMFDKV VTPSDVGKLN  120
RLVIPKQHAE KYFPLDSSTN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK  180
EKKLDAGDIV SFQRGVGEFG KDRLFIDWRR RPDAPDPPPM AAFQLPGHFS FHHRGSATAV  240
PWGPLLLRPG AAAGAMHMSA RDHSQASHLG PYRNSCGGGS GCSYGYGCGN VVSLNACPNS  300
SSVYYQLRSS IGAGIAPRQV SAGMVQVPQG AGGGGAGGNE PVVFDSVPVV QGKVAAKRLR  360
LFGVNMECPI SESDDECDIL SSTSISHASI SSQAHQMSSS SSQQPPLQLR LYNGTPLPTI  420
QAEFLNKGKA SVSSSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4610421111117DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039648.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotO827993e-75NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A058ZWL10.0A0A058ZWL1_EUCGR; Uncharacterized protein
STRINGVIT_02s0025g03000.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-59B3 family protein